PubMed İndeksli Yayınlar Koleksiyonu by Institution Author "Erten, Cesim"
Now showing items 1-6 of 6
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BEAMS: backbone extraction and merge strategy for the global many-to-many alignment of multiple PPI networks
Alkan, Ferhat; Erten, Cesim (Oxford University Press, 2014)Motivation: Global many-to-many alignment of biological networks has been a central problem in comparative biological network studies. Given a set of biological interaction networks the informal goal is to group together ... -
Improving performances of suboptimal greedy iterative biclustering heuristics via localization
Erten, Cesim; Sözdinler, Melih (Oxford University Press, 2010)Motivation: Biclustering gene expression data is the problem of extracting submatrices of genes and conditions exhibiting significant correlation across both the rows and the columns of a data matrix of expression values. ... -
RedNemo: topology-based PPI network reconstruction via repeated diffusion with neighborhood modifications
Alkan, Ferhat; Erten, Cesim (Oxford University Press, 2017)Motivation: Analysis of protein-protein interaction (PPI) networks provides invaluable insight into several systems biology problems. High-throughput experimental techniques together with computational methods provide ... -
Reliability-Oriented bioinformatic networks visualization
Aladağ, Ahmet Emre; Erten, Cesim; Sözdinler, Melih (Oxford University Press, 2011)We present our protein-protein interaction (PPI) network visualization system RobinViz (reliability-oriented bioinformatic networks visualization). Clustering the PPI network based on gene ontology (GO) annotations or ... -
SiPAN: simultaneous prediction and alignment of protein-protein interaction networks
Alkan, Ferhat; Erten, Cesim (Oxford University Press, 2015)Motivation: Network prediction as applied to protein-protein interaction (PPI) networks has received considerable attention within the last decade. Because of the limitations of experimental techniques for interaction ... -
SPINAL: scalable protein interaction network alignment
Aladağ, Ahmet Emre; Erten, Cesim (Oxford University Press, 2013)Motivation: Given protein-protein interaction (PPI) networks of a pair of species a pairwise global alignment corresponds to a one-to-one mapping between their proteins. Based on the presupposition that such a mapping ...