Mühendislik ve Doğa Bilimleri Fakültesi

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Citation - WoS: 5
Citation - Scopus: 6
(3+3+2) Warped-Like Product Manifolds With Spin(7) Holonomy
(Elsevier Science Bv, 2011) Uğuz, Selman; Bilge, Ayşe Hümeyra
We consider a generalization of eight-dimensional multiply warped product manifolds as a special warped product by allowing the fiber metric to be non-block diagonal. We define this special warped product as a (3 + 3 + 2) warped-like manifold of the form M = F x B. where the base B is a two-dimensional Riemannian manifold and the fibre F is of the form F = F-1 x F-2 where the F-i(i = 1 2) are Riemannian 3-manifolds. We prove that the connection on M is completely determined by the requirement that the Bonan 4-form given in the work of Yasui and Ootsuka [Y. Yasui and T. Ootsuka Spin(7) holonomy manifold and superconnection Class. Quantum Gravity 18(2001)807-816] be closed. Assuming that the F-i are complete connected and simply connected it follows that they are isometric to S-3 with constant curvature k > 0 and the Yasui-Ootsuka solution is unique in the class of (3 + 3 + 2) warped-like product metrics admitting a specific Spin(7) structure. Crown Copyright (C) 2011 Published by Elsevier B.V. All rights reserved.
Citation - WoS: 23
Citation - Scopus: 26
Absolute Configuration and Biological Profile of Pyrazoline Enantiomers as Mao Inhibitory Activity
(Wiley, 2019) Goksen, Umut Salgin; Sarıgül, Sevgi; Bultinck, Patrick; Herrebout, Wouter; Doğan, İlknur; Yelekçi, Kemal; Uçar, Gülberk; Kelekçi, Nesrin Gökhan
A new racemic pyrazoline derivative was synthesized and resolved to its enantiomers using analytic and semipreparative high-pressure liquid chromatography. The absolute configuration of both fractions was established using vibrational circular dichroism. The in vitro monoamine oxidase (MAO) inhibitory profiles were evaluated for the racemate and both enantiomers separately for the two isoforms of the enzyme. The racemic compound and both enantiomers were found to inhibit hMAO-A selectively and competitively. In particular the R enantiomer was detected as an exceptionally potent and a selective MAO-A inhibitor (K-i = 0.85 x 10(-3) +/- 0.05 x 10(-3) mu M and SI: 2.35 x 10(-5)) whereas S was determined as poorer compound than R in terms of K-i and SI (0.184 +/- 0.007 and 0.001). The selectivity of the enantiomers was explained by molecular modeling docking studies based on the PDB enzymatic models of MAO isoforms.
Citation - WoS: 1
Citation - Scopus: 1
Accelerating Brain Simulations on Graphical Processing Units
(IEEE, 2015) Kayraklıoğlu, Engin; El-Ghazawi, Tarek A.; Bozkuş, Zeki
NEural Simulation Tool(NEST) is a large scale spiking neuronal network simulator of the brain. In this work we present a CUDA(R) implementation of NEST. We were able to gain a speedup of factor 20 for the computational parts of NEST execution using a different data structure than NEST's default. Our partial implementation shows the potential gains and limitations of such possible port. We discuss possible novel approaches to be able to adapt generic spiking neural network simulators such as NEST to run on commodity or high-end GPGPUs.
Citation - WoS: 4
Citation - Scopus: 8
Accurate Indoor Positioning With Ultra-Wide Band Sensors
(Tubitak, 2020) Arsan, Taner
Ultra-wide band is one of the emerging indoor positioning technologies. In the application phase, accuracy and interference are important criteria of indoor positioning systems. Not only the method used in positioning, but also the algorithms used in improving the accuracy is a key factor. In this paper, we tried to eliminate the effects of off-set and noise in the data of the ultra-wide band sensor-based indoor positioning system. For this purpose, optimization algorithms and filters have been applied to the raw data, and the accuracy has been improved. A test bed with the dimensions of 7.35 m x 5.41 m and 50 cm x 50 cm grids has been selected, and a total of 27,000 measurements have been collected from 180 test points. The average positioning error of this test bed is calculated as 16.34 cm. Then, several combinations of algorithms are applied to raw data. The combination of Big Bang-Big Crunch algorithm for optimization, and then the Kalman Filter have yielded the most accurate results. Briefly, the average positioning error has been reduced from 16.34 cm to 7.43 cm.
Citation - WoS: 12
Citation - Scopus: 15
Accurate Refinement of Docked Protein Complexes Using Evolutionary Information and Deep Learning
(Imperıal College Press, 2016) Akbal-Delibas, Bahar; Farhoodi, Roshanak; Pomplun, Marc; Haspel, Nurit
One of the major challenges for protein docking methods is to accurately discriminate native-like structures from false positives. Docking methods are often inaccurate and the results have to be refined and re-ranked to obtain native-like complexes and remove outliers. In a previous work we introduced AccuRefiner a machine learning based tool for refining protein-protein complexes. Given a docked complex the refinement tool produces a small set of refined versions of the input complex with lower root-mean-square-deviation (RMSD) of atomic positions with respect to the native structure. The method employs a unique ranking tool that accurately predicts the RMSD of docked complexes with respect to the native structure. In this work we use a deep learning network with a similar set of features and five layers. We show that a properly trained deep learning network can accurately predict the RMSD of a docked complex with 1.40 angstrom error margin on average by approximating the complex relationship between a wide set of scoring function terms and the RMSD of a docked structure. The network was trained on 35000 unbound docking complexes generated by RosettaDock. We tested our method on 25 different putative docked complexes produced also by RosettaDock for five proteins that were not included in the training data. The results demonstrate that the high accuracy of the ranking tool enables AccuRefiner to consistently choose the refinement candidates with lower RMSD values compared to the coarsely docked input structures.
Citation - WoS: 6
Citation - Scopus: 7
Achievable Performance of Bayesian Compressive Sensing Based Spectrum Sensing
(IEEE, 2014) Başaran, Mehmet; Erküçük, Serhat; Çırpan, Hakan Ali
In wideband spectrum sensing compressive sensing approaches have been used at the receiver side to decrease the sampling rate if the wideband signal can be represented as sparse in a given domain. While most studies consider the reconstruction of primary user's signal accurately it is indeed more important to analyze the presence or absence of the signal correctly. Furthermore these studies do not consider the achievable lower bounds of reconstruction error and how well the selected method performs correspondingly. Motivated by these issues we investigate in detail the primary user detection performance of Bayesian compressive sensing (BCS) approach in this paper. Accordingly we (i) determine the BCS signal reconstruction performance in terms of mean-square error (MSE) compression ratio and signal-to-noise ratio (SNR) and compare it with the conventionally used basis pursuit approach (ii) determine how well BCS performs compared with the Bayesian Cramer-Rao lower bound (BCRLB) of the signal reconstruction error and (iii) assess the probability of detection performance of BCS for various SNR and compression ratio values. The results of this study are important for determining the achievable performance of BCS based spectrum sensing.
Citation - WoS: 1
Citation - Scopus: 1
Across Dimensions: Two- and Three-Dimensional Phase Transitions From the Iterative Renormalization-Group Theory of Chains
(2020) Keçoğlu, İbrahim; Berker, A. Nihat
Sharp two- and three-dimensional phase transitional magnetization curves are obtained by an iterative renormalization-group coupling of Ising chains, which are solved exactly. The chains by themselves do not have a phase transition or nonzero magnetization, but the method reflects crossover from temperaturelike to fieldlike renormalization-group flows as the mechanism for the higher-dimensional phase transitions. The magnetization of each chain acts, via the interaction constant, as a magnetic field on its neighboring chains, thus entering its renormalization-group calculation. The method is highly flexible for wide application.
Citation - WoS: 4
Citation - Scopus: 5
Action Recognition Using Random Forest Prediction With Combined Pose-Based and Motion-Based Features
(IEEE, 2013) Ar, İlktan; Akgül, Yusuf Sinan
In this paper we propose a novel human action recognition system that uses random forest prediction with statistically combined pose-based and motion-based features. Given a set of training and test image sequences (videos) we first adopt recent techniques that extract low-level features: motion and pose features. Motion-based features which represent motion patterns in the consecutive images are formed by 3D Haar-like features. Pose-based features are obtained by the calculation of scale invariant contour-based features. Then using statistical methods we combine these low-level features to a novel compact representation which describes the global motion and the global pose information in the whole image sequence. Finally Random Forest classification is employed to recognize actions in the test sequences by using this novel representation. Our experimental results on KTH and Weizmann datasets have shown that the combination of pose-based and motion-based features increased the system recognition accuracy. The proposed system also achieved classification rates comparable to the state-of-the-art approaches.
Citation - Scopus: 2
Active Reconfigurable Control of a Submarine With Indirect Adaptive Control
(2003) Demirci, Ufuk; Kerestecioğlu, Feza
An indirect adaptive controller is designed for submersibles. The design is developed using a linearized MIMO model of a submarine. Standard recursive least squares estimation method is used to estimate the parameters. Depth and pitch angle of the submarine is controlled by means of the well-known indirect self-tuning method. In case of a system fault estimated parameters of the submarine model have been used to update the controller coefficients.
Citation - WoS: 4
Citation - Scopus: 6
Agent-Based Optimization To Estimate Nash Equilibrium in Power Markets
(Taylor & Francis Inc, 2013) Yücekaya, Ahmet; Valenzuela, Jorge
In most deregulated power markets firms bid daily into a day-ahead power market. The auction mechanism supply and demand determine the equilibrium at each hour. In this environment firms aim to maximize their revenues by carefully determining their bids. This requires the development of effective computational methods that help them estimate their competitors' behaviors under incomplete information. In this article an agent-based method that uses particle swarm optimization is described to simulate the behavior of market participants. Particle swarm optimization is used in the bidding process and an agent-based model is applied to find a Nash equilibrium. Different stopping conditions are used to determine the equilibrium. Experimental results are presented for two power systems.
Citation - Scopus: 1
An Alternative Approach To Design Lumped Element Delay Equalizers
(Istanbul Univ Fac Engineering, 2015) Şengül, Metin Y.
In this paper an algorithm has been proposed to design lumped element delay equalizers which is considered as a single block as opposed to the existing methods in literature. Then after obtaining the desired delay performance the designed delay equalizer is divided and realized as cascaded first-order and/or second-order all-pass circuits. An example is given to illustrate the utilization of the proposed algorithm.
Amplitude and Frequency Modulations With Cellular Neural Networks
(Springer, 2015) Tander, Baran; Özmen, Atilla
Amplitude and frequency modulations are still the most popular modulation techniques in data transmission at telecommunication systems such as radio and television broadcasting gsm etc. However the architectures of these individual systems are totally different. In this paper it is shown that a cellular neural network with an opposite-sign template can behave either as an amplitude or a frequency modulator. Firstly a brief information about these networks is given and then the amplitude and frequency surfaces of the generated quasi-sine oscillations are sketched with respect to various values of their cloning templates. Secondly it is proved that any of these types of modulations can be performed by only varying the template components without ever changing their structure. Finally a circuit is designed simulations are presented and performance of the proposed system is evaluated. The main contribution of this work is to show that both amplitude and frequency modulations can be realized under the same architecture with a simple technique specifically by treating the input signals as template components.
Citation - Scopus: 1
An Analysis For The Use Of Compressed Sensing Method İn Microwave İmaging [mikrodalga Görüntülemede Sıkıştırılmış Algılama Yönteminin Kullanımına Yönelik Bir Analiz]
(Institute of Electrical and Electronics Engineers Inc., 2017) Yiğit, Enes; Tekbaş, Mustafa; Ünal, İlhami; Erdogan, Sercan; Çalışkan, Cafer
One of the most important problems encountered in microwave imaging methods is intensive data processing traffic that occurs when high resolution and real time tracking is desired. Radar signals can be recovered without loss of data with a randomly selected subset of the measurement data by compression sensing (CS) method which has been popular in recent years. For this reason in this study the use and capabilities of the CS method were investigated for tracking moving human and the target information was correctly determined for the data obtained much below the Nyquist sampling criterion. In this study it was revealed that the CS method can be developed for target detection and tracking. © 2017 IEEE.
Citation - WoS: 4
Citation - Scopus: 5
Analysis of Extended Busy Tone Performance for Coexistence Between Wran and Wlan Tvws Networks
(IEEE, 2015) Karatalay, Onur; Erküçük, Serhat; Baykaş, Tunçer
TV White Spaces indicate spectrum bands which were reserved for licensed terrestrial TV broadcasting and opened to unlicensed use under regulatory conditions. One important regulation which is common in all regulatory domains is no harmful interference is created to licensed devices. On the other hand interference between unlicensed devices is not regulated. As a result system designers developed new methods to improve coexistence between TVWS networks. Extended busy tone one of such methods is designed for coexistence between wireless regional area and wireless local area networks based on IEEE 802.22 and 802.11af standards respectively. In this paper we analyse the performance of extended busy tone at different range conditions and verify via simulations under realistic conditions. Our results indicate that the method can reduce interference considerably at intermediate distances and enable networks to operate without a significant reduction in throughput.
Citation - WoS: 5
Citation - Scopus: 5
Analysis of Mixed-Element Structures Formed With Shunt Capacitors Separated by Transmission Lines
(IEEE-Inst Electrical Electronics Engineers Inc, 2019) Şengül, Metin Y.; Çakmak, Gökhan
In this brief, the analysis of mixed-element structures formed with shunt capacitors separated by commensurate transmission lines is performed first time in the literature. First, a low-pass lumped-element ladder network is considered. Then the series inductors are replaced with commensurate transmission lines. As a result, a practically important mixed-element structure is obtained. Then the description of the structure by means of two frequency variables (one for shunt capacitors and one for transmission lines) is detailed: Explicit expressions for the coefficients of the descriptive two-variable polynomials in terms of the coefficients of the single variable boundary polynomials are derived for various numbers of elements, which are obtained first time in the literature. Finally, a mixed-element broadband matching network is designed to illustrate the usage of the obtained expressions. If it is preferred not to have shunt capacitors, they can be replaced with open-ended stubs via Richard's transformation. So the resultant circuit is extremely suitable for microstrip fabrication.
Citation - WoS: 7
Citation - Scopus: 12
An Analysis of Price Spikes and Deviations in the Deregulated Turkish Power Market
(Elsevier, 2019) Gayretli, Gizem; Yücekaya, Ahmet; Bilge, Ayşe Hümeyra
The successful operation of a real time market is related to the planning in the day ahead market. We analyze the day ahead and real time market data for the Turkish power market for the period 2012-2015 to classify price spikes and their causes. We also focus on the levels of deviation between the day ahead market values and the real time market values. We define price deviation and load deviation ratios to measure the level of deviation both in price and demand. The analysis for the load is based on load shedding and cycling values. We analyze the mean and standard deviation in market prices and we determine the price spike as a two sigma deviation from the mean value. It is shown that 60% of the price deviation ratios are in the range of ( +/- 20%), while 44% are in the range of ( +/- 10%) and 35% are in the range of (+/- 5%). We also show that 56.9% of the spikes are due to problems in the generation of natural gas based power plants which affect the day ahead and real time prices. A total of 29.2% of the spikes are due to power plant and system failures that affect only real time prices. The share of high temperature based spikes is 13.9% which is a result of air conditioner usage.
Citation - Scopus: 3
Analytic Network Process (anp) for Solar Power Plant Location Problem
(Institute of Industrial Engineers, 2010) Ayağ, Zeki; Samanlıoğlu, Funda
Solar energy is the most readily available source of energy and one of the most important sources of the renewable energy because it is non-polluting and helps in lessening the greenhouse effect. Main problem of establishing a solar power plant is to determine its location. In the presence of many location alternatives and evaluation criteria a multiple-criteria decision making problem arises. In this work the location problem will be solved by using Analytic Network Process (ANP) to figure out the most satisfying alternative. A numerical example is also included to show the proposed methodology in Turkey.
Citation - Scopus: 89
An Analytic Network Process-Based Approach To Concept Evaluation in a New Product Development Environment
(Taylor & Francis, 2007) Ayağ, Zeki; Özdemir, Rifat Gürcan
Selecting the best product concept is one of the most critical tasks in a new product development (NPD) environment. Making decisions at this stage becomes very difficult due to imprecise and uncertain product requirements. So the evaluation process of determining the most satisfying conceptual design has been a very vital issue for companies to survive in fast-growing markets for a long time. Therefore most companies have used various methods to successfully carry out this difficult and time-consuming process. Of these methods an analytic hierarchy process (AHP) has been widely used in multiple-criteria decision-making problems (i.e. concept selection equipment evaluation). In this study however we use an analytic network process (ANP) a more general form of AHP due to the fact that AHP cannot accommodate the variety of interactions dependencies and feedback between higher and lower level elements. Briefly in this paper an ANP-based approach is presented to evaluate a set of conceptual design alternatives in order to reach to the best concept satisfying the needs and expectations of both customers and company. In addition a numerical example is presented to illustrate the proposed approach.
Analytic Solution of the Feldtkeller Equation
(Elsevier GMBH Urban & Fischer Verlag, 2009) Şengül, Metin Y.
In every reflectance-based application like broadband matching circuit modeling etc. a nonlinear equation following from energy conservation the Feldtkeller equation must be solved in order to obtain real networks. In the literature however there is no analytic solution available but only numerical solutions. Consequently the resulting error depends on the accuracy of the numerical tools. In this paper an analytic solution is proposed which is based on the modified ABCD-parameters of a lossless reciprocal two-port network. An algorithm is presented and examples are included to illustrate the implementation of the analytical method. (C) 2008 Elsevier GmbH. All rights reserved.
Citation - WoS: 1
Citation - Scopus: 3
Analytical Expense Management System
(IEEE, 2009) Bozkuş, Zeki; Bisson, Christophe; Arsan, Taner
Although the development of communication technologies (e.g: UMTS ADSL) allowed the elaboration of multiple users' web applications (e.g. information storage) there are still many improvements on many applications to be done and uncovered areas. Expense management systems on web application area are still in their infancy. Expense management software is widely spread in companies and most of time supported by their intranet. These solutions are quite simple as they mainly collect the information related to the expenses and may propose a simple aggregation of these figures. The result is close to what an excel sheet provides.

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