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SiPAN: simultaneous prediction and alignment of protein-protein interaction networks
(Oxford University Press, 2015)
Motivation: Network prediction as applied to protein-protein interaction (PPI) networks has received considerable attention within the last decade. Because of the limitations of experimental techniques for interaction ...
SPINAL: scalable protein interaction network alignment
(Oxford University Press, 2013)
Motivation: Given protein-protein interaction (PPI) networks of a pair of species a pairwise global alignment corresponds to a one-to-one mapping between their proteins. Based on the presupposition that such a mapping ...
Reliability-Oriented bioinformatic networks visualization
(Oxford University Press, 2011)
We present our protein-protein interaction (PPI) network visualization system RobinViz (reliability-oriented bioinformatic networks visualization). Clustering the PPI network based on gene ontology (GO) annotations or ...
BEAMS: backbone extraction and merge strategy for the global many-to-many alignment of multiple PPI networks
(Oxford University Press, 2014)
Motivation: Global many-to-many alignment of biological networks has been a central problem in comparative biological network studies. Given a set of biological interaction networks the informal goal is to group together ...
Improving performances of suboptimal greedy iterative biclustering heuristics via localization
(Oxford University Press, 2010)
Motivation: Biclustering gene expression data is the problem of extracting submatrices of genes and conditions exhibiting significant correlation across both the rows and the columns of a data matrix of expression values. ...
RedNemo: topology-based PPI network reconstruction via repeated diffusion with neighborhood modifications
(Oxford University Press, 2017)
Motivation: Analysis of protein-protein interaction (PPI) networks provides invaluable insight into several systems biology problems. High-throughput experimental techniques together with computational methods provide ...
A Robust Localization Framework to Handle Noisy Measurements in Wireless Sensor Networks
(IEEE, 2009)
We construct a robust localization framework to handle noisy measurements in wireless sensor networks. Traditionally many approaches employ the distance information gathered from ranging devices of the sensor nodes to ...
Biclustering Expression Data Based on Expanding Localized Substructures
(Springer-Verlag Berlin, 2009)
Biclustering gene expression data is the problem of extracting submatrices of genes and conditions exhibiting significant correlation across both the rows and the columns of a data matrix of expression values. We provide ...
Fully Decentralized and Collaborative Multilateration Primitives for Uniquely Localizing WSNs
(Springer International Publishing Ag, 2010)
We provide primitives for uniquely localizing WSN nodes. The goal is to maximize the number of uniquely localized nodes assuming a fully decentralized model of computation. Each node constructs a cluster of its own and ...
Fully decentralized, collaborative multilateration primitives for uniquely localizing WSNs
(Springer, 2009)
We provide primitives for uniquely localizing WSN nodes. The goal is to maximize the number of uniquely localized nodes assuming a fully decentralized model of computation. Each node constructs a cluster of its own and ...