Browsing by KHAS Author "Akbal-Delibas, Bahar"
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Machine Learning Approaches for Predicting Protein Complex Similarity
Authors:Farhoodi, Roshanak; Akbal-Delibas, Bahar; Haspel, Nurit
Publisher and Date:(Mary Ann Liebert Inc Publ, 2017)Discriminating native-like structures from false positives with high accuracy is one of the biggest challenges in protein-protein docking. While there is an agreement on the existence of a relationship between various favorable intermolecular interactions (e.g. Van der Waals electrostatic and desolvation forces) and the similarity of a conformation to its native structure the precise nature of this relationship is not known. Existing protein-protein docking methods typically formulate this ...
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Ranking Protein-Protein Binding Using Evolutionary Information and Machine Learning
Authors:Farhoodi, Roshanak; Akbal-Delibas, Bahar; Haspel, Nurit
Publisher and Date:(Association for Computing Machinery, 2017)Discriminating native-like complexes from false-positives with high accuracy is one of the biggest challenges in protein-protein docking. The relationship between various favorable intermolecular interactions (e.g. Van derWaals electrostatic desolvation forces etc.) and the similarity of a conformation to its native structure is commonly agreed though the precise nature of this relationship is not known very well. Existing protein-protein docking methods typically formulate this relationship as a ...