A Comparison of Fluorescence and Uv-Visible Spectrometry Techniques for Thermal Phase Transitions of Agarose Gels

dc.contributor.author Arda, Ertan
dc.contributor.author Pekcan, Mehmet Önder
dc.contributor.author Kara, Selim
dc.contributor.author Mergen, Ömer Bahadır
dc.contributor.author Pekcan, Önder
dc.contributor.other Molecular Biology and Genetics
dc.date.accessioned 2019-06-27T08:02:25Z
dc.date.available 2019-06-27T08:02:25Z
dc.date.issued 2015
dc.department Fakülteler, Mühendislik ve Doğa Bilimleri Fakültesi, Biyoinformatik ve Genetik Bölümü en_US
dc.description.abstract In this study thermoreversible phase transitions of high (HMP) and low (LMP) melting point agarose gels were investigated by using the UV-vis and fluorescence spectroscopy techniques. Pyranine was added to the aqueous solution of agarose as a fluorescence-probe. Transmitted light (I (tr)) and fluorescence emission (I (fl)) intensities from the gel samples with different agarose concentrations were monitored during the heating (gel-sol) and cooling (sol-gel) processes. For the both techniques gel-sol (T (gs)) and sol-gel (T (sg)) transition temperatures were determined from the first derivatives of the sigmoidal transition paths. It was observed that the critical transition temperatures obtained from UV-vis and fluorescence data slightly increased depending on the agarose type and concentration and those values were found to be in accord with each other. Transition activation energies were determined using the Arrhenius type equation and were found to be strongly correlated with the agarose content in the gel system. The produced gel-sol (Delta E (gs)) and sol-gel (Delta E (sg)) transition energies from the fluorescence data were found to be lower than that of the UV-vis data which was attributed to the temperature-dependent fluorescence quenching effect. en_US]
dc.identifier.citationcount 6
dc.identifier.doi 10.1007/s00289-014-1265-4 en_US
dc.identifier.endpage 175
dc.identifier.issn 0170-0839 en_US
dc.identifier.issn 1436-2449 en_US
dc.identifier.issn 0170-0839
dc.identifier.issn 1436-2449
dc.identifier.issue 2
dc.identifier.scopus 2-s2.0-84925521980 en_US
dc.identifier.scopusquality Q2
dc.identifier.startpage 157 en_US
dc.identifier.uri https://hdl.handle.net/20.500.12469/616
dc.identifier.uri https://doi.org/10.1007/s00289-014-1265-4
dc.identifier.volume 72 en_US
dc.identifier.wos WOS:000348982400001 en_US
dc.language.iso en en_US
dc.publisher Springer en_US
dc.relation.journal Polymer Bulletin en_US
dc.relation.publicationcategory Makale - Uluslararası Hakemli Dergi - Kurum Öğretim Elemanı en_US
dc.rights info:eu-repo/semantics/openAccess en_US
dc.scopus.citedbyCount 6
dc.subject Agarose en_US
dc.subject Transition energy en_US
dc.subject Critical temperature en_US
dc.subject Fluorescence probe en_US
dc.subject Thermoreversible phase transition en_US
dc.title A Comparison of Fluorescence and Uv-Visible Spectrometry Techniques for Thermal Phase Transitions of Agarose Gels en_US
dc.type Article en_US
dc.wos.citedbyCount 6
dspace.entity.type Publication
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