Mathematical Characterization of Thermo-Reversible Phase Transitions of Agarose Gels

dc.contributor.author Öğrenci, Arif Selçuk
dc.contributor.author Bilge, Ayşe Hümeyra
dc.contributor.author Pekcan, Önder
dc.contributor.author Pekcan, Mehmet Önder
dc.contributor.author Kara, Selim
dc.contributor.author Bilge, Ayşe Hümeyra
dc.contributor.other Industrial Engineering
dc.contributor.other Molecular Biology and Genetics
dc.date.accessioned 2019-06-27T08:01:12Z
dc.date.available 2019-06-27T08:01:12Z
dc.date.issued 2018
dc.department Fakülteler, Mühendislik ve Doğa Bilimleri Fakültesi, Biyoinformatik ve Genetik Bölümü en_US
dc.department Fakülteler, Mühendislik ve Doğa Bilimleri Fakültesi, Elektrik-Elektronik Mühendisliği Bölümü en_US
dc.department Fakülteler, Mühendislik ve Doğa Bilimleri Fakültesi, Endüstri Mühendisliği Bölümü en_US
dc.description.abstract The thermal phase transition temperatures of high (HMP) and low melting point (LMP) agarose gels were investigated by using UV-vis spectroscopy techniques. Transmitted light intensities from the gel samples with different agarose concentrations were monitored during the heating (gel-sol) and cooling (sol-gel) processes. It was observed that the transition temperatures T-m defined as the location of the maximum of the first derivative of the sigmoidal transition paths obtained from the UV-vis technique slightly increased by increasing the agarose concentration in both the HMP and LMP samples. Here we express the phase transitions of the agar-water system as a representative of reversible physical gels in terms of a modified Susceptible-Infected-Susceptible epidemic model whose solutions are the well-known 5-point sigmoidal curves. The gel point is hard to determine experimentally and various computational techniques are used for its characterization. Based on previous work we locate the gel point T-0 of sol-gel and gel-sol transitions in terms of the horizontal shift in the sigmoidal transition curve. For the gel-sol transition (heating) T-0 is greater than T-m i.e. later in time and the difference between T-0 and T-m is reduced as the agarose content increases. For the sol-gel transition (cooling) T-0 is again greater than T-m but it is earlier in time for all agarose contents and moves forward in time and gets closer to T-m as the agarose content increases. en_US]
dc.identifier.citationcount 8
dc.identifier.doi 10.1080/00222348.2018.1463052 en_US
dc.identifier.endpage 376
dc.identifier.issn 0022-2348 en_US
dc.identifier.issn 1525-609X en_US
dc.identifier.issn 0022-2348
dc.identifier.issn 1525-609X
dc.identifier.issue 5
dc.identifier.scopus 2-s2.0-85046020088 en_US
dc.identifier.scopusquality Q3
dc.identifier.startpage 364 en_US
dc.identifier.uri https://hdl.handle.net/20.500.12469/294
dc.identifier.volume 57 en_US
dc.identifier.wos WOS:000435693300004 en_US
dc.institutionauthor Öğrenci, Arif Selçuk en_US
dc.institutionauthor Pekcan, Önder en_US
dc.institutionauthor Bilge, Ayşe Hümeyra en_US
dc.language.iso en en_US
dc.publisher Taylor & Francis Inc en_US
dc.relation.publicationcategory Makale - Uluslararası Hakemli Dergi - Kurum Öğretim Elemanı en_US
dc.rights info:eu-repo/semantics/closedAccess en_US
dc.scopus.citedbyCount 9
dc.subject Agarose en_US
dc.subject Gel point en_US
dc.subject Generalized logistic curve en_US
dc.subject Sol-gel and gel-sol transition en_US
dc.title Mathematical Characterization of Thermo-Reversible Phase Transitions of Agarose Gels en_US
dc.type Article en_US
dc.wos.citedbyCount 9
dspace.entity.type Publication
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